Ontology-based Pattern Identification
Search Database
Biological Process
202
Cellular Component
82
Molecular Function
96
Browse Gene Ontology
Browse Genes
Download 381 GO Clusters
Download Gene List
Using the Database
Step 1: paste in a list of words in the left query box, then click the 'Submit Query' button.
Step 2: click on the heat map in the resultant page to browse the gene expression pattern and the gene list of the corresponding GO group.
Note: You may use GO IDs, gene names or description keywords (comma- or space- separated). To search a phrase, enclose words by double quote, such as
"cell invasion"
. Otherwise, it finds GO groups containing either
"cell"
or
"invasion"
.
For an example, click on the 'Example' button, then 'Smart Find'
Descriptions for Database Columns
Publication
Young JA, Fivelman QL, Blair PL, de la Vega P, Le Roch KG, Zhou Y, Carucci DJ, Baker DA, Winzeler EA.
The Plasmodium falciparum sexual development transcriptome: A microarray analysis using ontology-based pattern identification.
Mol Biochem Parasitol. 2005 Sep;143(1):67-79.
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