Ontology-based Pattern Identification
Search Database
Biological Process
167
Cellular Component
69
Molecular Function
84
Browse Gene Ontology
Browse Genes
Download 320 GO Clusters
Download Gene List A (ClusterSize<=1000)
Download Gene List B (ClusterSize>1000)
Using the Database
Step 1: paste in a list of words in the left query box, then click the 'Submit Query' button.
Step 2: click on the heat map in the resultant page to browse the gene expression pattern and the gene list of the corresponding GO group.
Note: You may use GO IDs, gene names or description keywords (comma- or space- separated). To search a phrase, enclose words by double quote, such as
"cell invasion"
. Otherwise, it finds GO groups containing either
"cell"
or
"invasion"
.
For an example, click on the 'Example' button, then 'Smart Find'
Dataset CEL Files
Files are available from the supplement web site of the previous k-means study (Le Roch et al.
Science
2003, 301:1503-8) [
Link to CEL files
]
Descriptions for Database Columns
Publication
Zhou Y, Young JA, Santrosyan A, Chen K, Yan SF, Winzeler EA.
In silico gene function prediction using ontology-based pattern identification.
Bioinformatics. 2005 Apr 1;21(7):1237-45.
Link
